Effects of sampling errors on abundance estimates from virtual population analysis for walleye pollock in northern waters of Sea of Japan

ABSTRACT:   Effects of sampling errors on abundance estimates from virtual population analysis (VPA) were quantified with the bootstrap method for stock of walleye pollock in the the Sea of Japan. In the bootstrap method, individual fish measurements were resampled. A total of 1000 bootstrap samples were produced for each year from 1991 to 2001. The coefficients of variation (CV) of catch at age in 2001 ranged 6.1–33.1%. The CV of an abundance estimate in 2001 ranged 9.0–35.7%. Abundance estimates of the oldest age and the latest year, which had larger CVs than the other estimates, were sensitive to sampling errors. Effects of sampling errors became smaller when the catch at age had been accumulated over a few years. Although VPA includes various types of errors, only the sampling errors have room for improvement in reality. Quantifying the effect of sampling error on VPA estimates is essential for sound and efficient stock management, and is emphasized in this study.     

Genes expressed in Japanese flounder <Emphasis Type="Italic">Paralichthys olivaceus</Emphasis> spleen: analysis of genes involved in immune function

ABSTRACT:   Expressed sequence tag (EST) analysis is an efficient tool for gene discovery and for profiling gene expression. A cDNA library developed from messenger RNA of the Japanese flounder, Paralichthys olivaceus spleen was constructed by directional cloning, in order to isolate functional genes involved in immunity in fish. A total of 1010 ESTs from the library were sequenced and compared with sequences in the GenBank database. Of the 1010 ESTs, 618 ESTs (61%) were identified as being homologous with known genes from many organisms by BLAST searches, whereas 392 (39%) appeared to be unknown and are likely to represent newly described genes. Of the identified genes, 105 (17%) encoded proteins associated with cell/organism defence and homeostasis. Of these 105 genes, 21 were identified for the first time in Japanese flounder. These included macrophage inflammatory protein (MIP)-3 α, granulin-A, novel immune-type receptor (NITR), interferon regulatory factor (IRF)-10, presenilin-like protein-2, and antizyme inhibitor. A comparison of ESTs derived from spleen, kidney, liver and leukocytes suggested that expression of immune-related genes in different tissues, organs, or cells are different.     

Sampling performance and operational quality of a frame trawl used to catch juvenile fish

SUMMARY: A sampling trawl with a rigid mouth; that is, the frame trawl, was designed so as to catch the large larval and juvenile fish more efficiently. The net consisted of four 13 m panels (nylon multifilament and twine diameter φ 0.75 mm, mesh size 8 mm). The frame of the net's mouth was composed of four stainless steel pipes (length 4 m, diameter φ 76 mm, thickness 5 mm). Several operations were conducted to investigate the capability of catching juveniles. A lot of Sardinops melanostictus juveniles, which are generally difficult to catch, were caught during every operation. Underwater observations proved that juveniles could not elude the capture. The frame trawl requires no special handling and is possible to operate in a rough sea.     

Comparison of behavioral characteristics of hatchery-reared and wild red tilefish Branchiostegus japonicus released in Maizuru Bay by using acoustic biotelemetry

ABSTRACT:   In order to establish techniques for the stock enhancement of red tilefish Branchiostegus japonicus , it is important to understand the behavioral characteristic of both hatchery-reared and wild fish. Four hatchery-reared and six wild fish were released and tracked using acoustic biotelemetry in Maizuru Bay, Kyoto, Japan, from August 2003 to February 2004. Data for the four wild fish released and tracked from January 2003 to May 2003 were also referred to for analysis. The released fish moved around in relatively large areas within about 10 days after the release, and then three hatchery-reared and two wild fish settled and stayed within limited areas. Fish of both origins showed strong site fidelity and diel activity patterns, i.e. they were detectable in the day but not at night, probably due to hiding behavior in their burrows at night. However, some discrepancies between fish of both origins were detected by comparing their track terms and activity patterns in detail. These discrepancies are probably attributable to the differences in environmental conditions that the fish had experienced before release.     

Directed movements and diel burrow fidelity patterns of red tilefish <Emphasis Type="Italic">Branchiostegus japonicus</Emphasis> determined using ultrasonic telemetry

ABSTRACT:   Wild red tilefish Branchiostegus japonicus were tracked and/or monitored for up to nearly 3 months in Western Wakasa Bay and Maizuru Bay, Japan, using ultrasonic telemetry to examine their movements and burrow fidelity patterns. In Western Wakasa Bay, it is guessed that fish released in relatively shallow waters, about 30 m deep, actively moved into more suitable deeper habitats after their release. In Maizuru Bay, the fish did not undertake large-scale movements and showed burrow fidelity about 1 month after their release. That is, the fish primarily remained in the burrow, which was constructed in the sea-bottom, during the night and moved outside the burrow during the day. The marked circadian rhythm from Fourier analysis indicated a clear diel movement pattern of the red tilefish.     

A genetic linkage map of the Japanese flounder, Paralichthys olivaceus

We report the first genetic linkage map of the Japanese flounder (Paralichthys olivaceus) constructed with 111 microsatellite markers and 352 AFLP fragments. The parental male linkage map consisted of 25 linkage groups while the female map consisted of 27 groups, with an average resolution of 8 and 6.6 cM, respectively. We have identified linkage among 96% of the markers and the total map length was estimated to be around 1000–1200 cM. This study reports the first low-density linkage map for the Japanese flounder and describes differences in sex recombination. Recombination rates were higher in male flounder compared to the female (7.4:1), a rare condition among vertebrates. This map is a starting point for the mapping of single loci and quantitative traits in flatfish species.     

Spawning grounds and maturation status in adult flathead flounder Hippoglossoides dubius off Niigata Prefecture, Sea of Japan

Investigations were conducted on the flathead flouder Hippoglossoides dubius to analyze the environmental conditions around the spawning grounds and the maturational status of spawners in the Sea of Japan off Niigata. In both sexes, larger fish matured earlier than smaller individuals, and participated in breeding from the early part of the spawning season. Males were always the predominant sex found within the spawning ground, likely because males spent longer periods in the spawning grounds than females. This finding further suggests that males matured earlier and maintained sexual activity for longer periods than females within the spawning grounds. Submarine topography and water temperature were concluded to be important factors affecting the formation of the spawning grounds. The spawning ground was located within a restricted area where bathymetric lines curve towards a shallow area. Adult fish usually occur in the Japan Sea Proper Water (<1 °C), but spawners gathered just below the surface mixing layer where water temperature was 5–10°C. Hence, it was thought that the flounder spawn at the upper tolerable water temperature limit (i.e. the shallowest accessible depth) to release their offspring into the surface layer.     

Influence of wall composition on thermal environment of wooden houses

This survey was conducted from 2005 to 2008 regarding the thermal environment of three types of experimental houses—a wood and mud composite wall type (Type WM), a mud wall type (Type M), and an insulated wall type (Type I). To reveal the influence of the wall composition of wooden houses on the indoor thermal environment, each experimental house was constructed on the same site. As a result, under natural indoor air temperatures, the monthly average indoor air temperature level and the time ratio of indoor air temperature surpassing the outdoor air temperature were in the following order: Type I > Type WM > Type M. Type WM exhibited the highest phase shift of air temperature, indicating that the insulation performance and heat capacity affect the phase shift of air temperature. The equalization of indoor air temperature through the suppression of the increase in the indoor air temperature of Type M is likely caused by low insulation performance and large thermal capacity. The time fluctuations in electric consumption by air conditioning and indoor–outdoor air temperature differences of each experimental house over 1 day indicated that a building’s thermal load and the thermal capacity are related.     

Influence of Hatchery Protocols on Mitochondrial DNA Variation in Japanese Flounder Juveniles

The Japanese flounder Paralichthys olivaceus is a commercially important fish that is stocked extensively from hatchery rearing programs in Japan. To examine the genetic variability of hatchery-raised juveniles of the Japanese flounder that are used for stocking into natural waters, we analyzed a portion of the mitochondrial genome. The mtDNA region extending from the 3'half of the cytochrome b gene to the central domain of the control region was PCR amplified and analyzed using 11 restriction endonucleases. We identified 34 polymorphic cleavage sites out of a total of 61 sites, which resulted in 67 different haplotypes in a total of 265 offspring, examined from eight hatchery stocks. Haplotype diversity of offspring at each of the eight hatcheries ranged from 0.49 ± 0.09 (SE) to 0.94 ± 0.03 (SE). Also, we observed 40 polymorphic sites out of a total of 59 sites, which resulted in a total of 50 haplotypes in 60 wild flounder. Haplotype diversity of the wild population was 0.98 ± 0.01 (SE). The use of subcultured fishes as broodstock appears to be one of the most important causes of reduced genetic diversity in hatchery-raised flounder juvenile. Our results suggest that the use of wild fish for broodstock is an effective way to maintain genetic variability in Japanese flounder offspring.     

Application of USLE for the prediction of nutrient losses in soil erosion processes

Soil erosion in agricultural fields affects not only land productivity but also water environment down stream. Many investigations have been made for the prediction of soil erosion processes. The Universal Soil Loss Equation (USLE) has been applied broadly for the prediction of average annual soil loss from upland fields. However, there are few reports concerning the prediction of nutrient (N, P) losses based on the USLE. Thus, the objective of this study is to propose the prediction equation of nitrogen and phosphorus losses during soil erosion processes on the basis of the USLE. In order to predict total nitrogen and phosphorus losses, the coefficients for total nitrogen or phosphorus transfer are derived on the basis of results from experimental field plots. Three bare-cover USLE plots with different amounts of granular chemical fertilizer were installed in an experimental upland field. There was a tendency for the coefficient of total nitrogen or phosphorus transfer to increase with the average concentration of total nitrogen or phosphorus in the soils. It follows that the more granular chemical fertilizer applied caused a higher coefficient of total nitrogen or phosphorus transfer in the calculations. Moreover, the coefficients in heavily fertilized plots were higher than 1.0. Through this investigation, it became clear that the nutrient losses during soil erosion could be predicted on the basis of the coefficient of total nitrogen or phosphorus transfer along with other soil erosion parameters.